Open Toxicogenomics · v3.2 · Public Release

Explore toxicogenomic signatures across species and omics.

A curated, peer-deposited repository of over- and under-expressed gene sets following exposure to environmental factors — searchable, comparable, and built for reproducible science.

Signatures deposited
0
0 compounds · 0% transcriptomics
Projects
0
public toxicogenomic studies
Species covered
0
across model organisms
How TOXsIgN works

From data submission to predictive analysis — a complete toxicogenomics workflow.

Submit Your Data
Upload your toxicogenomic signatures directly from your omics experiments. TOXsIgN accepts transcriptomics, proteomics, and epigenomics data across multiple species and experimental conditions.
Explore & Visualize
Browse the repository using our powerful search engine. Filter signatures by species, chemical, tissue, developmental stage, or omics type. Instantly visualize gene lists and experimental metadata.
Analyze with Tools
Run built-in bioinformatics tools directly on any signature. Compare across the repository, identify enriched biological pathways, or predict toxicological endpoints using machine learning.
toxsign.org/submit
Signature

New Signature Submission

Draft · autosaved
Project name
Species
Homo sapiens▾
Omics type
Transcriptomics▾
Experiment type
In vitro▾
Chemical factor
signature_genes.csv ✓
847 genes loaded · 423 up / 424 down
IDChemicalSpeciesTissueUpDown
TSG_001842BPAH. sapiensLiver↑234↓189
TSG_001731BPAM. musculusTestis↑412↓301
TSG_002104BPAR. norvegicusBrain↑178↓145
Top regulated geneslog₂FC
  • ESR1 +3.84
  • BRCA1 +2.91
  • TP53 −2.42
  • CYP1A1 +4.12
  • FOXO3 −1.87
  • AR +2.14
  • NR3C1 −1.62
  • GSTP1 +1.93
  • ESR1 +3.84
  • BRCA1 +2.91
  • TP53 −2.42
  • CYP1A1 +4.12
  • FOXO3 −1.87
  • AR +2.14
  • NR3C1 −1.62
  • GSTP1 +1.93
Expression heatmap6×6 genes
Signature Enrichment
Comparison
Top match: DEHP (r=0.91) ✓
Functional Enrichment
Analysis
steroid metabolic process p=2.3e-8response to estradiol p=5.1e-6
ChemPSy Spatial
ChemPSy
Mapped to estrogenic cluster · 8 neighbors
ChemPSy Prediction
ChemPSy · ML
Endocrine Disruptor · High confidence
0%
Browse by category

Three facets, one query. Combine filters to narrow the catalog.

Each chip reflects live catalog counts. Selections combine with AND semantics; open Advanced Search for complex boolean queries.

Open advanced search
 Species0
 Omics type0
 Experiment type0
Current queryspecies:* · omics:* · design:*→Show matching signatures
Analysis tools

Five instruments, one dataset. Run analyses directly against the repository.

Every tool accepts a deposited signature ID, a user-uploaded gene list, or a query built from the browse facets — no export/import loop required.

See all tools
Analysis

Functional Enrichment

Map your signature to GO, Reactome, and KEGG pathways with FDR-controlled overrepresentation.

Comparison

Similar signatures

From a signature or an uploaded gene list, find the closest signatures by directional overlap — concordant vs opposite — across species if wanted.

Comparison

Cross-species

Pick a compound tested in more than one species and see which genes respond the same way, oppositely, or in only one species.

ChemPSy

ChemPSy · Spatial

Project chemicals into a 2D chemical-similarity space derived from signature-level transcriptional responses.

ChemPSy

ChemPSy · Prediction

Predict likely Adverse Outcome Pathways for a query signature or gene list by read-across from its nearest neighbours in signature space.

Recent signatures

Latest depositions from the community.

Every signature links to its parent assay, factor, and project — with per-gene fold-change tables, raw contrasts, and submitter metadata.

View all 0
SignatureChemicalSpecies · TissueOmicsGenes (↑/↓)Added
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